public:lta_howto

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public:lta_howto [2016-12-23 15:32] – old revision restored (2016/11/30 14:12) wielpublic:lta_howto [2018-07-11 08:32] Reinoud Bokhorst
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 This is a short manual on how to search for and retrieve data from the LOFAR Long Term Archive. This is a short manual on how to search for and retrieve data from the LOFAR Long Term Archive.
  
-To access the LTA, go to: [[http://lofar.target.rug.nl|lofar.target.rug.nl]]+To access the LTA, go to: [[https://lta.lofar.eu|lta.lofar.eu]]
  
 For background information and in case of problems, please refer to the [[public:lta_faq|Frequently Asked Questions]] page. For background information and in case of problems, please refer to the [[public:lta_faq|Frequently Asked Questions]] page.
 +
 +====== Release Notes ======
 +
 +
 +^ Release ^ Description ^
 +| July 2018 | 1) All data is now searchable, not only released data or data of projects you're a member of. Note that for downloading data (staging) the proprietary restrictions still apply. \\ 2) All projects can now be selected by all users, not only by project members. This provides the means to filter data based on project.\\ 3) The user interface has been changed to improve user friendliness. Key points are a more intuitive menu structure, improved project selection/deselection and restyling. \\ 4) Implemented cone search algorithm based on the Haversine formula for angular distance calculation. The calculated angular distance to the reference coordinates is now displayed in the search results. \\ 5) Search keys added for "time resolution", "Frequency resolution" and "nr. of subbands per subband group" \\ 6) Search keys removed: "sky model database", strategy name" |
 +
 +====== Public vs Proprietary data ======
  
 ====== User Access ====== ====== User Access ======
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 Please visit https://webportal.astron.nl/pwm/public/ForgottenPassword to request a new one. Please visit https://webportal.astron.nl/pwm/public/ForgottenPassword to request a new one.
  
-=== Public data ===+=== Searching / retrieving data ===
  
-The LTA catalogue can be searched using the anonymous account (AWWORLD)This account gives direct access to the project "All public data", and search queries will return results of the entire catalogue because metadata are public for all LTA content.+The LTA catalogue can be searched directly without needing any account. Access to all projects and search queries will return results of the entire catalogue because metadata are public for all LTA content.
  
-Staging and subsequent downloading of public data always requires an account (if you have it, this is your MoM account) with LTA user access. If you do not have an account yet, you can register with "[[https://lofar.astron.nl/useradministration/public/setUpUserAccount.do|Create account]]". LTA access privileges will need to be granted by Science Support. Please, __once you have created your account, contact Science Support asking for LTA privileges__.+Staging and subsequent downloading of __**public**__ data always requires an account with LTA user access privileges. This automatically happens if you were a member of the original project proposal in Northstar/MoM. If you do not have an account yet, you can register with "[[https://lofar.astron.nl/useradministration/public/setUpUserAccount.do|Create account]]". LTA access privileges will need to be granted by Science Operations and Support. Please, __once you have created your account, submit a support request to the [[https://support.astron.nl/rohelpdesk|Radio Observatory helpdesk]] asking for LTA privileges__.
  
-=== Project data ===+To stage and retrieve project-related data in the LTA which are __**proprietary**__ you need to have an account in [[https://lofar.astron.nl/mom3|MoM]] that is enabled for the archive and coupled with the projects of interest. To this aim you can request Science Operations & Support to be added to the list of co-authors of the project. When you send such a request, you must add the project's PI in cc. After Science Operations and Support adds you to the project, you might get an email asking you to set a new password in [[https://webportal.astron.nl/pwm/private/Login|ASTRON Web Applications Password Self Service]].  Please note that this will set a new password not just for the LTA //but for MoM (LOFAR/WSRT) and Northstar as well//.
  
-To directly access project-related data in the LTA you need to have an account in [[https://lofar.astron.nl/mom3|MoM]] that is enabled for the archive. +=== Step-by-step guide to search and retrieve data ===
-  This automatically happens if you were a member of the original project proposal in Northstar/MoM. +
-  - Otherwise Science Support can add you to the project for which you need access upon request.+
  
-If you were not originally a member of the project in MoM, you can request to be added by Science Support. When you send such a request, you must add the project's PI in cc. After Science Support adds you to the project, you might get an email asking you to set a new password in [[https://webportal.astron.nl/pwm/private/Login|ASTRON Web Applications Password Self Service]].  Please note that this will set new password not just for the LTA //but for MoM (LOFAR/WSRT) and Northstar as well//.+__Basic search__: 
 +  * log in to https://lta.lofar.eu 
 +  * click SEARCH DATA in the top menu 
 +  * specify the data product types of interest and target name or coordinated 
 +  * click on "Search" button at the bottom 
 +  * from the screen that follows, you should be able to stage the data products
  
 +__Advanced search__:
 +  * log in to https://lta.lofar.eu/ 
 +  * click SEARCH DATA in the top menu
 +  * click on the side Advanced Search drop-down list
 +  * specify the data product types of interest from the drop down list
 +  * select products features and specify a target name or coordinated
 +  * click on "Search" button at the bottom
 +  * from the screen that follows, you should be able to stage the data products
 +
 +__Project search (to restrict all data searches to that project only)__:
 +  * log in to https://lta.lofar.eu/ 
 +  * click BROWSE PROJECTS in the top menu
 +  * at this level membership can be checked, with the first column showing if you are a member of the project or for finding public projects. Available options are:
 +    * click on the project name to view the project details
 +    * use the 'search' button to select the project and go to the search page
 +    * use the 'show data' button to select the project and to show all data in it
 +  * from the screen that follows, you should be able to either search / select / stage the data products
 ====== How to find data in the archive ====== ====== How to find data in the archive ======
  
-Once your account is set up, or as anonymous user (AWWORLD) you can navigate the catalogue.+Once your account is set up, or as anonymous user you can navigate the catalogue. In the former case you can login by clicking on the top right LOGIN button shown below.
  
 === Page navigation === === Page navigation ===
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-{{:public:lta_navigation.png|}} +{{:public:lta_menu.png?900|}}
- +
-A "project" can be selected by registered users that have access to a specific project. Subsequent searches will then be done within that project. +
- +
-Searching the catalogue is easiest by selecting one of the otions in the "Search" menu. Depending on the knowledge of the data you are looking for (if any), searches can be performed on e.g., target ("Simple Search"), date and/or observation-ID and more advanced parameters per data type ("Advanced Search").+
  
-Another option is to choose "Show Latest", which will show the latest additions in the LTA. This is particularely useful for project related searches.+A search in the LTA catalogue can be initiated by clicking on the SEARCH DATA button on the menuAt this point a default basic search is setup, where users can select the data product type of interest and perform a cone search. An advanced search mode, with more advanced parameters per data type, can also be selected by clicking on the drop menu on the left side
  
 +A "project" can be selected by clicking on the BROWSE PROJECTS button on the menu. This is particularly useful for project related searches, as well as for checking either public projects or user's co-author membership. At this stage several actions are allowed
 +    * Click on the project name to view the project details and eventually select it.
 +    * Use the 'search' button to select the project and go to the search page. Subsequent searches will then be done within that project.
 +    * Use the 'show data' button to select the project and to show all data in it.
  
 === Finding Data === === Finding Data ===
  
-{{:public:lta_observations.png|}}+{{:public:lta_observations_2018.png?900|}}
  
 Depending on the search parameters, e.g., which data products were requested (observation, pipeline), lists of observations and/or pipelines will be returned (see observations example above). From this point there are several options: Depending on the search parameters, e.g., which data products were requested (observation, pipeline), lists of observations and/or pipelines will be returned (see observations example above). From this point there are several options:
  
-  - select observations/pipelines and stage (prepare for download) all date related to the selection+  - select observations/pipelines and stage (prepare for download) all data related to the selection
   - select observations and "show pipelines" related to the observations, then select pipelines and stage   - select observations and "show pipelines" related to the observations, then select pipelines and stage
   - select observations/pipelines, "show dataproducts" related to the selection, possibly filter the data products (to have smaller selections) and then select and stage the data products   - select observations/pipelines, "show dataproducts" related to the selection, possibly filter the data products (to have smaller selections) and then select and stage the data products
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 ==== Unspecified Data/Process ==== ==== Unspecified Data/Process ====
  
-Some data has had problems somewhere in the automation and control part of the LOFAR software during observation or processing. Sometimes a few subbands might be affected, sometimes an entire observation. Science support will check the data, (re)run things manually or fix things if needed and then archive the data. This does mean that the automation and control sometimes loses track of the files and the archiving process has no information beyond the Observation ID and filename itself. In such cases a few subbands or an entire observation might end up under "Unspecified Process". We do attempt to fix things at a later date, but that is not always feasible. If the files were archived, the data itself is usable. What is missing is the information that the LTA needs to properly label and query the data.+Some data has had problems somewhere in the automation and control part of the LOFAR software during observation or processing. Sometimes a few subbands might be affected, sometimes an entire observation. Science Operations and Support will check the data, (re)run things manually or fix things if needed and then archive the data. This does mean that the automation and control sometimes loses track of the files and the archiving process has no information beyond the Observation ID and filename itself. In such cases a few subbands or an entire observation might end up under "Unspecified Process". We do attempt to fix things at a later date, but that is not always feasible. If the files were archived, the data itself is usable. What is missing is the information that the LTA needs to properly label and query the data.
  
 If an Observation is missing, or is missing subbands, please check if it ended up under Unspecified. If an Observation is missing, or is missing subbands, please check if it ended up under Unspecified.
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 Once you have a list of dataproducts, observations or pipelines, you can use the check boxes to select which files you want to download. The first check box can be used to select or deselect all files or observations on a page. Once you have a list of dataproducts, observations or pipelines, you can use the check boxes to select which files you want to download. The first check box can be used to select or deselect all files or observations on a page.
  
-{{:public:lta_howto2.png|}}+{{:public:lta_staging_1.png?900|}}
  
 The LOFAR Archive stores data on magnetic tape. This means that it cannot be downloaded right away, but has to be copied from tape to disk first. This process is called 'staging'. The LOFAR Archive stores data on magnetic tape. This means that it cannot be downloaded right away, but has to be copied from tape to disk first. This process is called 'staging'.
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 When you have made your selection of files, click on //stage//. This shows you the following message. It means that a request has been sent to the LTA staging service to start retrieving the requested files from the tape and make them available on disk. You will get a confirmation e-mail, to acknowledge that your staging request was received and the process was queued. When the files are staged, you will get a notification email informing you that your data are ready for retrieval. When you have made your selection of files, click on //stage//. This shows you the following message. It means that a request has been sent to the LTA staging service to start retrieving the requested files from the tape and make them available on disk. You will get a confirmation e-mail, to acknowledge that your staging request was received and the process was queued. When the files are staged, you will get a notification email informing you that your data are ready for retrieval.
  
-{{:public:lta_howto3.png|}}+{{:public:lta_howto_3.png?900|}}
  
 The e-mail that you get when the staging on disk is complete gives you a list of files and has several attachments. Amongst them are two files ''html.txt'' and ''srm.txt'': The e-mail that you get when the staging on disk is complete gives you a list of files and has several attachments. Amongst them are two files ''html.txt'' and ''srm.txt'':
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   - The amount of space available for staging data is limited although quite large. This space is however shared between all LOFAR LTA users. This includes LTA operations for buffering data from CEP to the LTA before it gets moved to tape. If many users are staging data at the same time, and/or LOFAR operations is transferring large amounts of data, the system might temporarily run low on disk space. You might then get a message that your request was only partially successful. In general the request will still finish 1-2 days later and we do monitor if requests don't get stuck and restart if needed.    - The amount of space available for staging data is limited although quite large. This space is however shared between all LOFAR LTA users. This includes LTA operations for buffering data from CEP to the LTA before it gets moved to tape. If many users are staging data at the same time, and/or LOFAR operations is transferring large amounts of data, the system might temporarily run low on disk space. You might then get a message that your request was only partially successful. In general the request will still finish 1-2 days later and we do monitor if requests don't get stuck and restart if needed. 
   - We strive to keep a copy of data that was staged on disk for 1-2 weeks so you have some time to download it. After that it might get removed to make space for more recent requests. The copy of the data on tape is only read and will still be available if you need to access the data again at a later stage but you might need to stage a copy to disk again.   - We strive to keep a copy of data that was staged on disk for 1-2 weeks so you have some time to download it. After that it might get removed to make space for more recent requests. The copy of the data on tape is only read and will still be available if you need to access the data again at a later stage but you might need to stage a copy to disk again.
-  - We are continuously trying to improve the reliability and speed of the available services. Please contact Science Support if you have any problems or suggestions for improvement. +  - We are continuously trying to improve the reliability and speed of the available services. Please contact Science Operations and Support if you have any problems or suggestions for improvement. 
-  - The data centres the LTA uses also have maintenance or small outages sometimes. Science Support can advice you if this is the case and when it is planned to end, if you are having trouble accessing data. In general this will not be at the same dates as the LOFAR stop days.+  - The data centres the LTA uses also have maintenance or small outages sometimes. Science Operations and Support can advice you if this is the case and when it is planned to end, if you are having trouble accessing data. In general this will not be at the same dates as the LOFAR stop days.
  
 ===== Download data ===== ===== Download data =====
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 ==== SRM download ==== ==== SRM download ====
  
-If you open the file ''srm.txt'' this file contains a list of srm locations which you would feed to ''srmcp''. SRM is a GRID specific protocol that is currently supported for data at the SARA and Jülich locations. It is faster, especially if you have significantly more than 1 Gbit/s bandwidth. It requires a valid [[GRID certificate]] and installation of the [[GRID srm software installation|GRID srm software]]. NB There is an [[srmclientinstallation|alternative installation that does not require root privileges]]. Contact Science Support if you think you might need a GRID account but it can not be provided by your own institute.+If you open the file ''srm.txt'' this file contains a list of srm locations which you would feed to ''srmcp''. SRM is a GRID specific protocol that is currently supported for data at the SARA and Jülich locations. It is faster, especially if you have significantly more than 1 Gbit/s bandwidth. It requires a valid [[GRID certificate]] and installation of the [[GRID srm software installation|GRID srm software]]. NB There is an [[srmclientinstallation|alternative installation that does not require root privileges]]. Contact Science Operations and Support if you think you might need a GRID account but it can not be provided by your own institute.
 An example command line would be: An example command line would be:
   srmcp -server_mode=passive -copyjobfile=srm.txt   srmcp -server_mode=passive -copyjobfile=srm.txt
  • Last modified: 2020-11-04 15:36
  • by Bernard Asabere